{ "_id": "6ad47ed0104c877e3b4145aa", "Package": "opa", "Type": "Package", "Title": "An Implementation of Ordinal Pattern Analysis", "Version": "0.8.2.033", "Authors@R": "person(\"Timothy\", \"Beechey\", email = \"tim.beechey@proton.me\",\nrole = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0001-8858-946X\"))", "Description": "Quantifies hypothesis to data fit for repeated measures\nand longitudinal data, as described by Thorngate (1987)\n and Grice et al., (2015)\n. Hypothesis and data are encoded\nas pairwise relative orderings which are then compared to\ndetermine the percentage of orderings in the data that are\nmatched by the hypothesis.", "License": "GPL (>= 3)", "URL": "https://timbeechey.github.io/opa/", "BugReports": "https://github.com/timbeechey/opa/issues", "Encoding": "UTF-8", "LazyData": "true", "SystemRequirements": "C++17", "RoxygenNote": "7.3.1", "VignetteBuilder": "knitr", "Repository": "https://timbeechey.r-universe.dev", "Date/Publication": "2025-06-28 05:46:21 UTC", "RemoteUrl": "https://github.com/timbeechey/opa", "RemoteRef": "HEAD", "RemoteSha": "1881bdd6bc03e1ad07b3f375c8f728d1e62f589b", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-10-18 07:59:23 UTC", "User": "root" }, "Author": "Timothy Beechey [aut, cre] (ORCID:\n)", "Maintainer": "Timothy Beechey ", "_user": "timbeechey", "_type": "src", "_file": "opa_0.8.2.033.tar.gz", "_fileid": "https://r2.ropensci.org/016d1be68345ab2aae9a8ea8c16746e36f2d8f5939b2faee259c596c02a0de9a", "_filesize": 864709, "_sha256": "016d1be68345ab2aae9a8ea8c16746e36f2d8f5939b2faee259c596c02a0de9a", "_expires": "2027-01-26T08:09:51.000Z", "_created": "2026-10-18T07:59:23.000Z", "_published": "2026-10-18T08:09:52.854Z", "_buildurl": "https://github.com/r-universe/timbeechey/actions/runs/39109513565", "_status": "success", "_host": "GitHub-Actions", "_jobs": [ { "job": 117623084623, "time": 95, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "12130081368" }, { "job": 117623084601, "time": 106, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "12128949770" }, { "job": 117623084627, "time": 84, "config": "linux-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "12130535657" }, { "job": 117623084572, "time": 114, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "12129966091" }, { "job": 117623084616, "time": 89, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "12129029711" }, { "job": 117623084630, "time": 248, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "12130595363" }, { "job": 117623084626, "time": 123, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "12130715108" }, { "job": 117623084632, "time": 291, "config": "macos-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "12129882171" }, { "job": 117622463693, "time": 204, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "12130180999" }, { "job": 117623084621, "time": 110, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "12130051564" }, { "job": 117623084559, "time": 189, "config": "windows-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "12129394972" }, { "job": 117623084575, "time": 135, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "12129464489" }, { "job": 117623084633, "time": 104, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "12130171248" }, { "job": 117623084638, "time": 197, "config": "windows-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "12130485303" }, { "job": 117623084606, "time": 102, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "12130226095" } ], "_upstream": "https://github.com/timbeechey/opa", "_commit": { "id": "1881bdd6bc03e1ad07b3f375c8f728d1e62f589b", "author": "timbeechey ", "committer": "timbeechey ", "message": "Updated README\n", "time": 1751089581 }, "_maintainer": { "name": "Timothy Beechey", "email": "tim.beechey@proton.me", "orcid": "0000-0001-8858-946X" }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.10", "role": "Depends" }, { "package": "Rcpp", "role": "LinkingTo" }, { "package": "RcppArmadillo", "role": "LinkingTo" }, { "package": "Rcpp", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "lattice", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "tinytest", "role": "Suggests" } ], "_owner": "timbeechey", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_topics": [ "data-analysis", "hypothesis-testing", "longitudinal", "ordinal", "rcpp", "repeated-measures", "statistics", "cpp" ], "_stars": 1, "_contributors": [ { "user": "timbeechey", "count": 202, "uuid": 66388815 } ], "_userbio": { "uuid": 66388815, "type": "user", "name": "Timothy Beechey", "followers": 0 }, "_downloads": { "count": 393, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/opa" }, "_devurl": "https://github.com/timbeechey/opa", "_pkgdown": "https://timbeechey.github.io/opa/", "_searchresults": 3, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/opa.html", "extra/readme.html", "extra/readme.md" ], "_homeurl": "https://github.com/timbeechey/opa", "_realowner": "timbeechey", "_cranurl": true, "_releases": [ { "version": "0.1.0", "date": "2022-02-24" }, { "version": "0.2.0", "date": "2022-03-01" }, { "version": "0.3.6", "date": "2022-04-05" }, { "version": "0.4.1", "date": "2022-06-17" }, { "version": "0.4.3", "date": "2022-07-11" }, { "version": "0.5.2", "date": "2022-08-07" }, { "version": "0.5.3", "date": "2022-09-29" }, { "version": "0.6", "date": "2023-01-06" }, { "version": "0.7.1", "date": "2023-02-04" }, { "version": "0.7.3", "date": "2023-02-11" }, { "version": "0.7.4", "date": "2023-02-18" }, { "version": "0.8.1", "date": "2023-05-03" }, { "version": "0.8.2", "date": "2024-02-16" }, { "version": "0.8.3", "date": "2024-03-11" } ], "_exports": [ "compare_conditions", "compare_groups", "compare_hypotheses", "correct_pairs", "cval_plot", "group_cvals", "group_pccs", "group_results", "hypothesis", "incorrect_pairs", "individual_cvals", "individual_pccs", "individual_results", "opa", "pcc_plot", "random_pccs" ], "_datasets": [ { "name": "bees", "title": "Bee data", "object": "bees", "class": [ "data.frame" ], "fields": [ "bee", "condition", "t1", "t2", "t3", "t4", "t5", "t6", "t7", "t8", "t9", "t10", "t11", "t12" ], "rows": 20, "table": true, "tojson": true }, { "name": "pituitary", "title": "Childhood growth data", "object": "pituitary", "class": [ "data.frame" ], "fields": [ "distance", "age", "individual", "sex" ], "rows": 108, "table": true, "tojson": true } ], "_help": [ { "page": "bees", "title": "Bee data", "topics": [ "bees" ] }, { "page": "compare_conditions", "title": "Calculates PCCs and c-values based on pairwise comparison of conditions.", "topics": [ "compare_conditions" ] }, { "page": "compare_groups", "title": "Calculate the c-value of the difference in PCCs produced by two groups", "topics": [ "compare_groups" ] }, { "page": "compare_hypotheses", "title": "Calculate the c-value of the difference in PCCs produced by two hypotheses", "topics": [ "compare_hypotheses" ] }, { "page": "correct_pairs", "title": "Return the number of pairs of observations matched by the hypothesis", "topics": [ "correct_pairs" ] }, { "page": "cval_plot", "title": "Plot individual chance values", "topics": [ "cval_plot" ] }, { "page": "group_cvals", "title": "Return the group chance values of the specified model", "topics": [ "group_cvals" ] }, { "page": "group_pccs", "title": "Return the group PCCs of the specified model", "topics": [ "group_pccs" ] }, { "page": "group_results", "title": "Group-level PCC and chance values.", "topics": [ "group_results" ] }, { "page": "hypothesis", "title": "Create a hypothesis object", "topics": [ "hypothesis" ] }, { "page": "incorrect_pairs", "title": "Return the number of pairs of observations not matched by the hypothesis", "topics": [ "incorrect_pairs" ] }, { "page": "individual_cvals", "title": "Return the individual chance values of the specified model", "topics": [ "individual_cvals" ] }, { "page": "individual_pccs", "title": "Return the individual PCCs of the specified model", "topics": [ "individual_pccs" ] }, { "page": "individual_results", "title": "Individual-level PCC and chance values.", "topics": [ "individual_results" ] }, { "page": "opa", "title": "Fit an ordinal pattern analysis model", "topics": [ "opa" ] }, { "page": "pcc_plot", "title": "Plot individual PCCs.", "topics": [ "pcc_plot" ] }, { "page": "pituitary", "title": "Childhood growth data", "topics": [ "pituitary" ] }, { "page": "plot.opafit", "title": "Plots individual-level PCCs and chance-values.", "topics": [ "plot.opafit" ] }, { "page": "plot.opaGroupComparison", "title": "Plot group comparison PCC replicates.", "topics": [ "plot.opaGroupComparison" ] }, { "page": "plot.opahypothesis", "title": "Plot a hypothesis.", "topics": [ "plot.opahypothesis" ] }, { "page": "plot.opaHypothesisComparison", "title": "Plot hypothesis comparison PCC replicates.", "topics": [ "plot.opaHypothesisComparison" ] }, { "page": "plot.oparandpccs", "title": "Plot PCC replicates.", "topics": [ "plot.oparandpccs" ] }, { "page": "print.opafit", "title": "Displays the call used to fit an ordinal pattern analysis model.", "topics": [ "print.opafit" ] }, { "page": "print.opaGroupComparison", "title": "Prints a summary of results from hypothesis comparison.", "topics": [ "print.opaGroupComparison" ] }, { "page": "print.opahypothesis", "title": "Print details of a hypothesis", "topics": [ "print.opahypothesis" ] }, { "page": "print.opaHypothesisComparison", "title": "Prints a summary of results from hypothesis comparison.", "topics": [ "print.opaHypothesisComparison" ] }, { "page": "print.pairwiseopafit", "title": "Displays the results of a pairwise ordinal pattern analysis.", "topics": [ "print.pairwiseopafit" ] }, { "page": "random_pccs", "title": "Return the random order generated PCCs used to calculate the group chance value", "topics": [ "random_pccs" ] }, { "page": "summary.opafit", "title": "Prints a summary of results from a fitted ordinal pattern analysis model.", "topics": [ "summary.opafit" ] }, { "page": "summary.opaGroupComparison", "title": "Prints a summary of results from hypothesis comparison.", "topics": [ "summary.opaGroupComparison" ] }, { "page": "summary.opaHypothesisComparison", "title": "Prints a summary of results from hypothesis comparison.", "topics": [ "summary.opaHypothesisComparison" ] } ], "_readme": "https://github.com/timbeechey/opa/raw/HEAD/README.md", "_rundeps": [ "lattice", "Rcpp", "RcppArmadillo" ], "_sysdeps": [ { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "16-20260322-1ubuntu1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_vignettes": [ { "source": "opa.Rmd", "filename": "opa.html", "title": "opa", "engine": "knitr::rmarkdown", "headings": [ "Background", "Modeling repeated measures data", "Data", "Wide format", "Specifying a hypothesis", "Fitting an ordinal pattern analysis model", "Comparing hypotheses", "Comparing groups", "Difference thresholds", "References" ], "created": "2023-12-14 14:28:50", "modified": "2024-03-09 21:52:06", "commits": 9 } ], "_score": 3.6989700043360187, "_indexed": true, "_nocasepkg": "opa", "_universes": [ "timbeechey" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.8.2.033", "date": "2026-10-18T08:01:01.000Z", "distro": "resolute", "arch": "aarch64", "commit": "1881bdd6bc03e1ad07b3f375c8f728d1e62f589b", "fileid": "https://r2.ropensci.org/ec054d69f8f81e4f39c51cd37843e427a47f49ec0efaf0f8f015c79da55b82ea", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/timbeechey/actions/runs/39109513565" }, { "r": "4.7.0", "os": "linux", "version": "0.8.2.033", "date": "2026-10-18T08:01:16.000Z", "distro": "resolute", "arch": "x86_64", "commit": "1881bdd6bc03e1ad07b3f375c8f728d1e62f589b", "fileid": "https://r2.ropensci.org/66d98ca48b2c66d295243d5d7afb1294c7f0ff4c48f042d81da0b2f34b40962b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/timbeechey/actions/runs/39109513565" }, { "r": "4.6.1", "os": "linux", "version": "0.8.2.033", "date": "2026-10-18T08:00:55.000Z", "distro": "resolute", "arch": "aarch64", "commit": "1881bdd6bc03e1ad07b3f375c8f728d1e62f589b", "fileid": "https://r2.ropensci.org/5e48bed1cd0205dfa72ab88edb71701bb4c16b277e710d67469da9ebe6be949e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/timbeechey/actions/runs/39109513565" }, { "r": "4.6.1", "os": "linux", "version": "0.8.2.033", "date": "2026-10-18T08:01:15.000Z", "distro": "resolute", "arch": "x86_64", "commit": "1881bdd6bc03e1ad07b3f375c8f728d1e62f589b", "fileid": "https://r2.ropensci.org/973ddc5b2b18001504785af5024bcf5994451fb52466a8e4baf1114b4ab52791", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/timbeechey/actions/runs/39109513565" }, { "r": "4.5.3", "os": "mac", "version": "0.8.2.033", "date": "2026-10-18T08:05:32.000Z", "arch": "aarch64", "commit": "1881bdd6bc03e1ad07b3f375c8f728d1e62f589b", "fileid": "https://r2.ropensci.org/20664c9f7082fe585a0bf9defe5738a724ab6f7bcd49e0efdbb758e8316f7cb2", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/timbeechey/actions/runs/39109513565" }, { "r": "4.5.3", "os": "mac", "version": "0.8.2.033", "date": "2026-10-18T08:05:21.000Z", "arch": "x86_64", "commit": "1881bdd6bc03e1ad07b3f375c8f728d1e62f589b", "fileid": "https://r2.ropensci.org/e8fad0bb71883e01b6fc75918562e69edb8b76d417cd33542da63dc293b25c0f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/timbeechey/actions/runs/39109513565" }, { "r": "4.6.1", "os": "mac", "version": "0.8.2.033", "date": "2026-10-18T08:09:06.000Z", "arch": "aarch64", "commit": "1881bdd6bc03e1ad07b3f375c8f728d1e62f589b", "fileid": "https://r2.ropensci.org/9abc4cc5b92ef39f4cb7169c3ccc13fa15268f1b0e70640e96dea66fc3817832", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/timbeechey/actions/runs/39109513565" }, { "r": "4.6.1", "os": "mac", "version": "0.8.2.033", "date": "2026-10-18T08:03:29.000Z", "arch": "x86_64", "commit": "1881bdd6bc03e1ad07b3f375c8f728d1e62f589b", "fileid": "https://r2.ropensci.org/d813ecdef136cd15e842fe973b1f78178725385742887723a87a78a019c8d0e4", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/timbeechey/actions/runs/39109513565" }, { "r": "4.6.0", "os": "wasm", "version": "0.8.2.033", "date": "2026-10-18T08:01:31.000Z", "arch": "emscripten", "commit": "1881bdd6bc03e1ad07b3f375c8f728d1e62f589b", "fileid": "https://r2.ropensci.org/bed773e17966e796408abcf8ed7b0629567f1f966317ec5b063a3664abb57dd1", "status": "success", "buildurl": "https://github.com/r-universe/timbeechey/actions/runs/39109513565" }, { "r": "4.7.0", "os": "win", "version": "0.8.2.033", "date": "2026-10-18T08:02:20.000Z", "arch": "aarch64", "commit": "1881bdd6bc03e1ad07b3f375c8f728d1e62f589b", "fileid": "https://r2.ropensci.org/e7c65f2c95d874be74f6ca239ba976886075068cd14f334667ac50d71926258a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/timbeechey/actions/runs/39109513565" }, { "r": "4.7.0", "os": "win", "version": "0.8.2.033", "date": "2026-10-18T08:00:32.000Z", "arch": "x86_64", "commit": "1881bdd6bc03e1ad07b3f375c8f728d1e62f589b", "fileid": "https://r2.ropensci.org/417074971aee51b6186f760fe373ed58643b381ced983f979d4b02490a1b86fa", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/timbeechey/actions/runs/39109513565" }, { "r": "4.5.3", "os": "win", "version": "0.8.2.033", "date": "2026-10-18T08:00:56.000Z", "arch": "x86_64", "commit": "1881bdd6bc03e1ad07b3f375c8f728d1e62f589b", "fileid": "https://r2.ropensci.org/0dca1a1e945a2a9d581b63604c81591eb9c3a2db1ab2554b8f542104730cec63", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/timbeechey/actions/runs/39109513565" }, { "r": "4.6.1", "os": "win", "version": "0.8.2.033", "date": "2026-10-18T08:02:30.000Z", "arch": "aarch64", "commit": "1881bdd6bc03e1ad07b3f375c8f728d1e62f589b", "fileid": "https://r2.ropensci.org/0c618cc4c88168d7f9e4995564de4622e0b1d6f00804c669fc5d7c0b68c52c3d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/timbeechey/actions/runs/39109513565" }, { "r": "4.6.1", "os": "win", "version": "0.8.2.033", "date": "2026-10-18T08:00:32.000Z", "arch": "x86_64", "commit": "1881bdd6bc03e1ad07b3f375c8f728d1e62f589b", "fileid": "https://r2.ropensci.org/463bcab31b3018cfc64dd172b50193f440d0167b43bf9ee80922c4cd807afb2f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/timbeechey/actions/runs/39109513565" } ] }